PUBLICATIONS
2023
Liu, C., Chatzianestis, I., Pfirrmann, T., Salim, R., Minina, E., Moazzami, A., Stael, S., Gutierez-Beltran, E., Pitsili, E., Dörmann, P., D'Andrea S., Gevaert, K., Romero-Campero, F., Ding P, Nowack M., van Breusegem, F., Jones,, J.D.G., Bozhkov, P., Moschou, P.* Seed Longevity is Controlled by Metacaspases. Research Sq. (2023) DOI: 10.21203/rs.3.rs-2836590/v1 [Open Access]
Zhou, Y., Niu, R., Tang, Z., Mou, R., Wang, Z., Zhu, S., Yang, H., Ding, P., Xu, G.* Plant HEM1 specifies a condensation domain to control immune gene translation. Nat. Plants (2023) DOI: 10.1038/s41477-023-01355-7
Tang B., Feng L., Ding, P., Ma, W.* Cell type-specific responses to fungal infection in plants revealed by single-cell transcriptomics. bioRxiv. (2023) DOI: 10.1101/2023.04.03.535386 [Open Access]
Jiang, Y.*, Ding, P.* Calcium signaling in plant immunity: A spatiotemporally controlled symphony. Trends Plant Sci. (2023) DOI: 10.1016/j.tplants.2022.11.001 [Cover Story]
* Correspondance.
2022
Aerts N.#, Chhillar H.#, Ding P* & Van Wees S.* Transcriptional regulation of plant innate immunity. Essays Biochem (2022) DOI: 10.1042/EBC20210100 [Open Access]
Ngou, P.-M.*, Ding, P.* & Jones, J.D.G.* Thirty years of resistance: Zig-zag through the plant immune system. Plant Cell (2022) DOI: 10.1093/plcell/koac041 [Open Access]
* Correspondance; # Equal contribution.
2021
Mukhi, N., Brown, H., Gorenkin, D., Ding, P., Bentham, A.R., Stevenson, C.E.M., Jones, J.D.G.*, and Banfield, M.J.* Perception of structurally distinct effectors by the integrated WRKY domain of a plant immune receptor. Proc. Natl. Acad. Sci. USA 118. (2021) DOI: 10.1073/pnas.2113996118
Ding, P.*, Sakai, T., Shrestha, R. K., Perez, N. M., Guo, W., Ngou, B. P. M., He, S., Liu, C., Feng, X., Zhang, R., Vandepoele, K., MacLean, D. & Jones, J. D.* Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors. J. Exp. Bot. 72 (22), 7927-7941 (2021) DOI: 10.1093/jxb/erab373
Plant Cell Atlas Consortium, Jha, S.G., Borowsky, A.T., Cole, B.J., Fahlgren, N., Farmer, A., Huang, S.-S.C., Karia, P., Libault, M., Provart, N.J., et al., Ehrhardt, D. W.*, Birnbaum, K. D.*, Rhee, S. Y.* Vision, challenges and opportunities for a Plant Cell Atlas. Elife 10, e66877 (2021) DOI: 10.7554/eLife.66877 (consortium member)
Ngou, B. P. M.*, Jones, J. D.* & Ding, P.* Plant immune networks. Trends Plant Sci. (2021) DOI: 10.1016/j.tplants.2021.08.012 [Cover Story]
Yuan, M.#, Ngou, B. P. M.#, Ding, P.* & Xin, X.* PTI-ETI crosstalk: an integrative view of plant immunity. Curr. Opin. Plant Biol. 62, 102030 (2021) DOI: 10.1016/j.pbi.2021.102030
Ngou, B.P.M., Ding, P., and Jones, J.D.G. (2021). Channeling plant immunity. Cell 184, 3358–3360 (2021) DOI: 10.1016/j.cell.2021.05.035
Ngou, B. P. M., Ahn, H.-K., Ding, P.* & Jones, J. D.* Mutual Potentiation of Plant Immunity by Cell-surface and Intracellular Receptors. Nature (2021) DOI: 10.1038/s41586-021-03315-7
Duxbury, Z., Wu, C.*, Ding, P.* A Comparative Overview of the Intracellular Guardians of Plants and Animals: NLRs in Innate Immunity and Beyond. Annu. Rev. Plant Biol. 72, 155-184 (2021) DOI: 10.1146/annurev-arplant-080620-104948
* Correspondance; # Equal contribution.
2020
Bjornson, M.*#, Kajala, K., Zipfel, C. & Ding, P.*# Low-cost and High-throughput RNA-seq Library Preparation for Illumina Sequencing from Plant Tissue. Bio Protoc 10, (2020) DOI: 10.21769/BioProtoc.3799
Duxbury, Z., Wang, S., MacKenzie, C. I., Tenthorey, J. L., Zhang, X., Huh, S. U., Hu, L., Hill, L., Ngou, P. M., Ding, P., Chen, J., Ma, Y., Guo, H., Castel, B., Moschou, P. N., Bernoux, M., Dodds, P. N., Vance, R. E. & Jones, J. D. G. Induced proximity of a TIR signaling domain on a plant-mammalian NLR chimera activates defense in plants. Proc. Natl. Acad. Sci. USA 117, 18832–18839 (2020) DOI: 10.1073/pnas.2001185117
Ding, P.*#, Ngou, B. P. M.#, Furzer, O. J., Sakai, T., Shrestha, R. K., MacLean, D. & Jones, J. D. G.* High-resolution expression profiling of selected gene sets during plant immune activation. Plant Biotechnol. J. 18, 1610–1619 (2020) DOI: 10.1111/pbi.13327
Ding, P.* & Ding, Y. Stories of salicylic acid: A plant defense hormone. Trends Plant Sci. 25, 549–565 (2020) DOI: 10.1016/j.tplants.2020.01.004
Guo, H., Ahn, H.-K., Sklenar, J., Huang, J., Ma, Y., Ding, P., Menke, F. L. H. & Jones, J. D. G. Phosphorylation-Regulated Activation of the Arabidopsis RRS1-R/RPS4 Immune Receptor Complex Reveals Two Distinct Effector Recognition Mechanisms. Cell Host Microbe 27, 769–781.e6 (2020) DOI: 10.1016/j.chom.2020.03.008
Ngou, B. P. M.#, Ahn, H.-K.#, Ding, P.*#, Redkar, A., Brown, H., Ma, Y., Youles, M., Tomlinson, L. & Jones, J. D. G.* Estradiol-inducible AvrRps4 expression reveals distinct properties of TIR-NLR-mediated effector-triggered immunity. J. Exp. Bot. 71, 2186–2197 (2020) DOI: 10.1093/jxb/erz571
* Correspondance; # Equal contribution.
2019
Castel, B., Ngou, P.-M., Cevik, V., Redkar, A., Kim, D.-S., Yang, Y., Ding, P. & Jones, J. D. G. Diverse NLR immune receptors activate defence via the RPW8-NLR NRG1. New Phytol. 222, 966–980 (2019) DOI: 10.1111/nph.15659
2018
Ding, P.*# & Redkar, A.*# Pathogens suppress host transcription factors for rampant proliferation. Trends Plant Sci. 23, 950–953 (2018) DOI: 10.1016/j.tplants.2018.08.010
Ma, Y., Guo, H., Hu, L., Martinez, P. P., Moschou, P. N., Cevik, V., Ding, P., Duxbury, Z., Sarris, P. F. & Jones, J. D. G. Distinct modes of derepression of an Arabidopsis immune receptor complex by two different bacterial effectors. Proc. Natl. Acad. Sci. USA 115, 10218–10227 (2018) DOI: 10.1073/pnas.1811858115
Shrestha, R. K.#, Ding, P.#, Jones, J. D. G. & MacLean, D. A workflow for simplified analysis of ATAC-cap-seq data in R. Gigascience 7, (2018) DOI: 10.1093/gigascience/giy080
Ding, P.*, Guo, H. & Jones, J. D. G.* Deadlier than the malate. Cell Res. 28, 609–610 (2018) DOI: 10.1038/s41422-018-0042-6
* Correspondance; # Equal contribution.
2017
Huh, S. U., Cevik, V., Ding, P., Duxbury, Z., Ma, Y., Tomlinson, L., Sarris, P. F. & Jones, J. D. G. Protein-protein interactions in the RPS4/RRS1 immune receptor complex. PLoS Pathog. 13, e1006376 (2017) DOI: 10.1371/journal.ppat.1006376
Ding, P.* & Jones, J. D. G.* Mis-placed Congeniality: When Pathogens Ask Their Plant Hosts for Another Drink. Dev. Cell 40, 116–117 (2017) DOI: 10.1016/j.devcel.2017.01.003
* Correspondance.
2016
Ding, P.#, Rekhter, D.#, Ding, Y.#, Feussner, K., Busta, L., Haroth, S., Xu, S., Li, X., Jetter, R., Feussner, I. & Zhang, Y. Characterization of a pipecolic acid biosynthesis pathway required for systemic acquired resistance. Plant Cell 28, 2603–2615 (2016) DOI: 10.1105/tpc.16.00486
Liang, X.#, Ding, P.#, Lian, K., Wang, J., Ma, M., Li, L., Li, L., Li, M., Zhang, X., Chen, S., Zhang, Y. & Zhou, J.-M. Arabidopsis heterotrimeric G proteins regulate immunity by directly coupling to the FLS2 receptor. Elife 5, e13568 (2016) DOI: 10.7554/eLife.13568.001
# Equal contribution.
2015
Nitta, Y., Ding, P. & Zhang, Y. Heterotrimeric G proteins in plant defense against pathogens and ABA signaling. Environ Exp Bot 114, 153–158 (2015) DOI: 10.1016/j.envexpbot.2014.06.011
2014
Zhang, Z., Liu, Y., Ding, P., Li, Y., Kong, Q. & Zhang, Y. Splicing of receptor-like kinase-encoding SNC4 and CERK1 is regulated by two conserved splicing factors that are required for plant immunity. Mol. Plant 7, 1766–1775 (2014) DOI: 10.1093/mp/ssu103
Nitta, Y., Ding, P. & Zhang, Y. Identification of additional MAP kinases activated upon PAMP treatment. Plant Signal. Behav. 9, e976155 (2014) DOI: 10.4161/15592324.2014.976155
2013
Liu, J.#, Ding, P.#, Sun, T., Nitta, Y., Dong, O., Huang, X., Yang, W., Li, X., Botella, J. R. & Zhang, Y. Heterotrimeric G proteins serve as a converging point in plant defense signaling activated by multiple receptor-like kinases. Plant Physiol. 161, 2146–2158 (2013) DOI: 10.1104/pp.112.212431
# Equal contribution.
2012
Yang, Y., Zhang, Y., Ding, P., Johnson, K., Li, X. & Zhang, Y. The ankyrin-repeat transmembrane protein BDA1 functions downstream of the receptor-like protein SNC2 to regulate plant immunity. Plant Physiol. 159, 1857–1865 (2012) DOI: 10.1104/pp.112.197152
2010
Germain, H., Qu, N., Cheng, Y. T., Lee, E., Huang, Y., Dong, O. X., Gannon, P., Huang, S., Ding, P., Li, Y., Sack, F., Zhang, Y. & Li, X. MOS11: a new component in the mRNA export pathway. PLoS Genet. 6, e1001250 (2010) DOI: 10.1371/journal.pgen.1001250
Zhang, Y.#, Xu, S.#, Ding, P.#, Wang, D., Cheng, Y. T., He, J., Gao, M., Xu, F., Li, Y., Zhu, Z., Li, X. & Zhang, Y. Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors. Proc. Natl. Acad. Sci. USA 107, 18220–18225 (2010) DOI: 10.1073/pnas.1005225107
Zhang, Y., Yang, Y., Fang, B., Gannon, P., Ding, P., Li, X. & Zhang, Y. Arabidopsis snc2-1D activates receptor-like protein-mediated immunity transduced through WRKY70. Plant Cell 22, 3153–3163 (2010) DOI: 10.1105/tpc.110.074120
# Equal contribution.